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napari-spotiflow-0.4.4

Spotiflow is a deep learning-based, threshold-agnostic, subpixel-accurate 2D and 3D spot detection method for fluorescence microscopy. It comes with a few pre-trained models for different types of data, but you can also train your own model on your data. The napari-spotiflow plugin provides an easy-to-use interface to run spotiflow from napari. For more information see the official documentation.

Please refer to the VIBE documentation for more information.

Requirements

  • Apptainer

Build Instructions

To build the container, run the following command in the terminal:

apptainer build napari-spotiflow-0.4.4.sif build.def

Run Instructions

This container runs by default napari with:

apptainer run --nv napari-spotiflow-0.4.4.sif