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fiji-base-20260611

Fiji is a popular open-source image processing package based on ImageJ. It provides a comprehensive set of tools for scientific image analysis, including support for various plugins and scripting languages. This container includes Fiji version 2.17.1 with a selection of pre-installed plugins including: - IJPB-plugins - 3Dscript - 3D ImageJ Suite - DeepImageJ - PTBIOP - SAMJ - clij2 - Labkit

Please refer to the VIBE documentation for more information.

Requirements

  • Apptainer

Build Instructions

To build the container, run the following command in the terminal:

apptainer build fiji-base-20260611.sif build.def

Run Instructions

This container runs by default fiji with:

apptainer run --nv fiji-base-20260611.sif