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meisterlab-denoise-20250702

This is the first part of a workflow from the Meister lab. It uses noise2void for denoising microscopy images, on the IZB cluster. Get more information on the original repository for this workflow.

Requirements

  • Apptainer

Build Instructions

To build the container, run the following command in the terminal:

apptainer build meisterlab-denoise-20250702.sif build.def

Run Instructions

This container runs by default jupyter lab with:

apptainer run --nv meisterlab-denoise-20250702.sif

[!IMPORTANT] Add the --nv flag to be able to use the GPU.

Note

This container is part of a specific lab workflow. For using this container read the documentation of the lab owner or get in touch for support.