cellpose-gui-4.0.8

About

This container provides Graphical User Interface (GUI) for Cellpose, a powerful and user-friendly deep learning tool for cell segmentation. It automatically identifies and outlines cells in various microscopy images, even with challenging or low-contrast data. Key features include pre-trained models for diverse cell types, a graphical user interface for easy use and customization, and the ability to train custom models. For detailed documentation, tutorials, and further information, please visit the official Cellpose website: https://cellpose.org/.

Please refer to the VIBE documentation for more information.

Requirements

• Apptainer

Build Instructions

To build the container, run the following command in the terminal:

apptainer build cellpose-gui-4.0.8.sif build.def

Run Instructions

This container runs by default cellpose with:

apptainer run --nv cellpose-gui-4.0.8.sif